fixes to compiles on OSX,Linux

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@923 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 810-816 from branches/minimization_1:
Need a good class for roadrunners simulation data. The calss SimulationData renamed to RoadRunnerData.
RoadRunnerData is what comes back after a simulation..
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Creating the minimizationresult class.
the one parameter, brute force ui and plugin almost finalized

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minor fixes
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Testing out lmfit
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Setting up lm plugin

Renamed TSelectionRecord to SelectionRecord


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Getting plugin setup 
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added c api function getPluginName
Designing a minimizationData class, to be used to exchange data between minimization plugins and end user applications

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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@924 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 817-823 from branches/minimization_1:
More plugin parameter stuff
Minimization Data is taking form
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Added many new plugin routines
Getting the minimization data flow more robust


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Get the inner plugin working...
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Fixed gcc compile error
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Getting ML algorithm working... some weird scaling problem..

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Setting up plotting of residuals
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Re-organized some C-API functions.. 
Removing rrc_support and putting all those functions in rrc_utilities


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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@925 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 824-836 from branches/minimization_1:
Removed rrc_support
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Minor changes..
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MOre fitting
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Added model to test two species fitting
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Creating folder for a simple lm fit, lm_A
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Using the same fitting frame for two different plugins..
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Running the demos
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Minor change
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Some cleaning up
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Making example more readable
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Added group project file
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Reorganising
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Moving lmfit to thirdparty
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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@926 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 837-842 from branches/minimization_1:
Added cmake file for lmfit
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Renames
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Now building lm fit as part of ThirdParties
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moved around files...
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Getting on with the multi vector, multi parameter fitting
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Getting closer...
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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@927 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 843-850 from branches/minimization_1:
Figured out how to use lmfit for multi specie models and several parameters
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Cleaned up the LM fitting example... moving it to a plugin, and make it general
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Found out about a bug 'somewhere' when starting parameters are 'bad'


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organized
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Got the lm minimization working in a plugin the test UI.. looks pretty good

Still some small fixes regarding selection of species and parameters to be sorted out
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Added C-API function getModelName (from NOM)

Changing the C UI to be more versatile. Need to be able to save data, and load experimental data
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Added saving data to file in the C UI

Refactored 'extractFileName' functions to be called 'getFileName' instead
Added getFileExtension utility function
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Added code to stream RoadRunner data from file

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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@928 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 851-881 from branches/minimization_1:
Making the UI more useful..
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Added set log level drop down
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Created a simple roadrunner data format..
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Added writing of weights to roadrunner data file..
Fixed plotting of residuals

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Implemented weights into fitting algorithm
Changed name of C api functions regarding Result data structure to use the name RRData instead.


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Added support for minimization of input data containing missing points
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Changed minimization plugin to allow creation of model data not existing as exp. data on input.

Some refactoring - changed Add method in StringlIst lass to lowercase add
Changed UI to create and plot proper selections for the minimization plugin.

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Fixed getVersion call
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Added isAllocated function
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Updated UI:
 Changed LM fitting frame to plot to external chart
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Added choosing model to the fitting frame, instead of grabbing it from the main UI..
Added some utility functions to vclUtils and Utils..


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Added an about form
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Found a memory bug related to lm data structure..

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Updated doxy docs
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updated delphi roadrunner API
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Preparing to merge branches
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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@929 c0027639-9190-0b57-01eb-f09a03790dae
Added a comment

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@930 c0027639-9190-0b57-01eb-f09a03790dae
Not sure exactly whats going on with this folder and cmake..


git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@931 c0027639-9190-0b57-01eb-f09a03790dae
Minor changes.. got fitting UI running with the latest

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@932 c0027639-9190-0b57-01eb-f09a03790dae
Mini update

git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@936 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 879-880 from branches/refactor_modelgen:
renamed ModelFromC to ExecutableModel, this will the the new abstract executable model interface
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partial refactor of model generation
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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@940 c0027639-9190-0b57-01eb-f09a03790dae
Merged revision(s) 889 from branches/refactor_modelgen:
Merge branch 'master' into git-refactor-modelgen
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git-svn-id: https://roadrunnerlib.googlecode.com/svn/trunk@941 c0027639-9190-0b57-01eb-f09a03790dae