Initial commit
Initial commit
Revert "Initial commit"

This reverts commit 46db5b48a33909e7f92342b853ce499386f06b52.
Removed Netbeans specific files.
Pre global
Global reconstruction done.
clean up
Filter fixed, diversity tools added
Changed priors and initialization
Cross-validation implemented, bootstrapping included
Recombinator added.
Started with fastq implementation, pre E step fork/join
Speedup 10x
Position wise epsilon
Position && generator wise epsilon
Position wise epsilon, pre RECOMB2012 commit.
GNU GPLv3 added
Edited help
Added -K help
Epsilon training can be activated with -trainEpsilon