fix bad macro replacement that broke domino example

git-svn-id: https://svn.salilab.org/imp/trunk@16272 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
em3d score updates

git-svn-id: https://svn.salilab.org/imp/trunk@16273 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove useless argument

git-svn-id: https://svn.salilab.org/imp/trunk@16274 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
cut dead code

git-svn-id: https://svn.salilab.org/imp/trunk@16275 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
remove useless files search

git-svn-id: https://svn.salilab.org/imp/trunk@16276 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add missing #include

git-svn-id: https://svn.salilab.org/imp/trunk@16277 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
save module name in data

git-svn-id: https://svn.salilab.org/imp/trunk@16278 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix doxygen building

git-svn-id: https://svn.salilab.org/imp/trunk@16279 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix permissions

git-svn-id: https://svn.salilab.org/imp/trunk@16280 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix file structure

git-svn-id: https://svn.salilab.org/imp/trunk@16281 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
generate config files from a script

This means that scons finally knows all the dependencies and the code is much simpler. Also support the normal IMP_X_HAS_Y cpp symbol format as it avoids failing transparently when you get the symbol name wrong or forget to include the header

git-svn-id: https://svn.salilab.org/imp/trunk@16282 e91f8c7b-0e32-4433-a9ac-4502d39a4eab