Both NCBI and extra DB models are loaded and NCBI is renamed
PathHasher has class method to check that a directory is PathHasher
A list file for training sequence can contain PathHasher paths
Makeflow file and driver script to build reference model DBs
Method to write raw file content for a set of IDs to output stream
Collect scoring SeqDb IDs in a separate step to maintain proper dependency.
Stream input fasta to scoring without parsing for speed.
Source environment before calling python
Steps in manually edited makeflows use env wrapper.
Benchmark completed on NC scaffolds against scaffolds