VCFRUN: Added provisional code for a nuew Generic Runner
Added a new field to QueryResult
Added a new generic type to Runner
Merge branch 'developAleman' into develop
Renamed VcfFilterList to SortedList
Added a Generic type to SortedList
Reorganize code. Moved some classes from bioformats to Commons
Created a Generic Filter. Now VcfFilter extends to this Generic Filter (Filter).
Merge branch 'feature/reorganizeCode' into develop
Removed a bug int EffectCalculator
First version of the class representing a format independent alignment
Alignment class constructor signature redefined
Merge branch 'develop' of github.com:opencb/java-libs into develop
New method for getting differences between a cigar and a reference sequence. Insertions and deletions tested
pom: now pom.xml are aware of each other
Merge form cgonzalez
Conversion of mismatches from cigar to AlignmentDifference tested
commons module and folder renamed to commons-lib to avoid conflicts with the name of parent project
Merge branch 'develop' of github.com:opencb/java-common-libs into develop
Moved the GenericTest to commons