small tweaks
initial implementation of pubchem rest service adapter
Added comparator package. This needs to be refactored at least for a better package name.
Refactors comparator package in mdk-tool-compare
Adds Brenda parser and PseudoFingerprintChemicalNames
Moved Brenda parser.
Added CDKMoleculeBuilder and HMTLTagResolver to temporary place. These classes should be inspected later to decide what to do with them.
Adds additional comparators. Some of these should be replaced by using John's molecule hash coding classes.
Adds molecule connectivity service in lucene, according to the new MDK structure.
Adds connective component and largest connective component finder functionalities.
Adds ChEBI secondary to primary component resolver.
Adds io/text/sdf package with classes to deal at a txt level with cross-references in SDF files.
Adds connectivity search and service interfaces, as well as ChEBI and PubChem Compound Connectivity loaders at the apps level (apps service).