fix various doc bugs

git-svn-id: https://svn.salilab.org/imp/trunk@16283 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Add missing header.


git-svn-id: https://svn.salilab.org/imp/trunk@16284 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Correct macro name.


git-svn-id: https://svn.salilab.org/imp/trunk@16285 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make dir before writing a file in it

git-svn-id: https://svn.salilab.org/imp/trunk@16286 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make RMF building a bit more tolerant of interrupted builds

git-svn-id: https://svn.salilab.org/imp/trunk@16287 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
don't print tons of crap when building gflags

git-svn-id: https://svn.salilab.org/imp/trunk@16288 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
suppress warning

git-svn-id: https://svn.salilab.org/imp/trunk@16289 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
don't print out build script and don't eat exceptions

git-svn-id: https://svn.salilab.org/imp/trunk@16290 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make sure all.cpp depends on config header to enforce that it gets build, although we maybe should just force it to be built each time anyway, probably no more expensive

git-svn-id: https://svn.salilab.org/imp/trunk@16291 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
update doxygen config file

git-svn-id: https://svn.salilab.org/imp/trunk@16292 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
add small imp image for doxygen

git-svn-id: https://svn.salilab.org/imp/trunk@16293 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
make more things take Selection instead of Hierarchy or Hierarchies

git-svn-id: https://svn.salilab.org/imp/trunk@16294 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
skip using the header for now to fix doxygen build

git-svn-id: https://svn.salilab.org/imp/trunk@16295 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
various futile attempts to solve the issue with swig not recognizing MapReaderWriter despite seeing the header

git-svn-id: https://svn.salilab.org/imp/trunk@16296 e91f8c7b-0e32-4433-a9ac-4502d39a4eab