finished pindel mod creation [iss13]
pindel mod runs insert size calculation if necessary
Merge branch 'master' of github.com:BauerLab/ngsane into iss13
setupscript
ami figure
updated presentation with AMI
iss13 changes checkin before merge with master
iss13 after merge with master
Logos added:
finalized iss13 and postcommand bugfixes in QC.sh and recover part of prepare jobsubmission
Merge branch 'iss13'
Merge remote-tracking branch 'clark-lab/master'
Merge branch 'master' into filedetection

Conflicts:
	conf/sample_header.sh
	core/prepareJobSubmission.sh