Rename documentation title to "Manual"
Add CMakeLists.txt for the HMM subdirectory
Also install README, COPYING, and documentation.pdf
Add an example call
Rename documentation to manual
Also summarize DNA binding protein analysis
Add introduction from paper to manual
Expand the tutorial
Mention the sequence logo drawing script
Set up PDF meta information
Centralize RNG seed generation
Make IUPAC regex MCMC reproducible
Making FIRE reproducible
Adjusting member visibility and accessibility
Merge branch 'master' of ssh://github.com/maaskola/dlhmm
Merge branch 'master' into update_random_number_generation
State license and source of availability
Note a thing to remember
Make HMM MCMC optimization reproducible
Move MCMC demo code into a different file