sci-biology/brat: Version Bump

Package-Manager: portage-2.2.7
Squashed commit of the following:

commit ef3b3395160b125e80e307af725f858fa2c8845b
Author: zcj <ustcscgy@163.com>
Date:   Thu Oct 10 15:31:02 2013 +0800

    sci-chemistry/ball: fix cmake-utils_use_use parameters

commit dbd9518910bea3f813abcc5ec97998e80c33ceab
Author: zcj <ustcscgy@163.com>
Date:   Thu Oct 10 15:19:50 2013 +0800

    sci-chemistry/ball: already fixed in upstream, remove patch

Signed-off-by: Justin Lecher <jlec@gentoo.org>
Squashed commit of the following:

commit fc52b002e2c028c5df04a4b9868b42989a934b03
Author: Justin Lecher <jlec@gentoo.org>
Date:   Mon Dec 9 16:05:48 2013 +0100

    sci-mathematics/acl2: Add missing die

    Package-Manager: portage-2.2.7

commit 79cdf0b10e55b0426e379dba02393c37c381753a
Author: zcj <ustcscgy@163.com>
Date:   Mon Dec 9 21:16:12 2013 +0800

    sci-mathematics/acl2-6.3: add new USE into metadata.xml

commit adf57931576d698bb613be4f7470e991efe6f0d0
Author: zcj <ustcscgy@163.com>
Date:   Mon Dec 9 16:48:24 2013 +0800

    sci-mathematics/acl2-6.3: clean up

commit 7cfe9431208ac8d2e2194e8ef07ba2c9c8a6d8cd
Author: zcj <ustcscgy@163.com>
Date:   Mon Dec 9 15:51:19 2013 +0800

    sci-mathematics/acl2: Version bump to 6.3

Signed-off-by: Justin Lecher <jlec@gentoo.org>
InCvs

Signed-off-by: Justin Lecher <jlec@gentoo.org>
sci-physics/root: update pdf docs, remove old
sci-physics/root: fix indentation and repoman warnings
Fix license, set USE="books" as default
Merge branch 'master' of https://github.com/gentoo-science/sci into acl2

Conflicts:
	sci-mathematics/acl2/Manifest
	sci-mathematics/acl2/acl2-6.3.ebuild
	sci-mathematics/acl2/metadata.xml