These are three heuristics adapted directly from the Ray paper. There's a
short explanation about them in the RayScores class but I can add more.
On Dec 15, 2013 10:13 PM, "Jianfeng Jia" <notifications@github.com> wrote:

> In
> genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/scaffolding2/RayScores.java:
>
> > +import java.util.ArrayList;
> > +import java.util.HashMap;
> > +import java.util.Map;
> > +import java.util.Map.Entry;
> > +
> > +import org.apache.hadoop.io.Writable;
> > +
> > +import edu.uci.ics.genomix.data.types.EDGETYPE;
> > +import edu.uci.ics.genomix.data.types.VKmer;
> > +import edu.uci.ics.genomix.data.types.VKmerList;
> > +
> > +public class RayScores implements Writable {
> > +
> > +    private HashMap<SimpleEntry<EDGETYPE, VKmer>, Rules> scores = new HashMap<>();
> > +
> > +    public void addRuleCounts(EDGETYPE et, VKmer kmer, int ruleA, int ruleB, int ruleC) {
>
> What's these ruleA, ruleB, ruleC ?
>
> —
> Reply to this email directly or view it on GitHub<https://github.com/uci-cbcl/genomix/pull/101/files#r8359489>
> .
>