Handle smaller transition vectors: we only need it as long as the
largest prime factor. Also print the vector.
Wrote SimpleErrorMatrix.
New implementation of ErrorKernel that considers order=1 and multiples
of the correct order. Still wrong: the dominant eigenvector has negative
entries.
Replaced JAMA with Apache Commons math for matrices. Wrote a stationary
distribution calculation method that actually works. Other small
changes. The current result is π=[0.21682, 0.21876, 0.06023, 0.22072, 0,
0.06077, 0, 0.2227].
Write vector instead of matrix.
Cleaned up, added max iterations for stationary distribution, and
reverted printing of vector instead of matrix.
Improved folds code.
Moved code related to order determination to a new comparison.order
package, and renamed GroupOrder and GroupOrderFactory to GroupComparator
and GroupComparatorFactory, respectively.
Started writing code to determine optimal order-detection.
Improvements to SimpleErrorMatrix.
Committing deletions left behind on move to comparison.order.
Wrote a class to determine optimal minMetricChange.
Small fixes to SymDRunner.
Merge branch 'master' of https://github.com/rcsb/symmetry-benchmark
Flush every iteration.
Flush every iteration, try 2.