Fix perl warning
increase count on a poll attempt
removed old code that would check for gobe's version through svn
Fix for issue 248, set default strand
Merge branch 'master' of github.com:LyonsLab/coge
updated sorting genomes using versioncmp instead of standard sort
massive upate on how this script works.  Now loads everything to memory for reading and writing.  Updated converting genomic hits to have relative chromosome position.
Merge branch 'master' of github.com:LyonsLab/coge
updated to include a local accessor function for storing genomic_sequence objects
modified with benchmarking and debugging, as well as loading whole chromosomes sequences and then sub_string them for pieces to feed to feature objects to generate output sequences.  Substantial performance gains
Add wobble shading to feature track, issue 246
added more debugging control
Merge branch 'master' of github.com:LyonsLab/coge
Fix missing showWobble case
Merge branch 'master' of github.com:LyonsLab/coge