Add version checks for bedtools and grabix, ensuring installation of latest versions
Provide support for hg19 RNA-seq transcript tarball, and automate download as part of biodata
Allow creation of tool specific temporary directories, avoiding deletion when using CloudBioLinux inside of CloudBioLinux. Fixes #120
Avoid checking for freec installation if not a supported platform. Fixes chapmanb/bcbio-nextgen#124
Update grabix with speed fixes for indexing and add pbgzip build: parallel block gzip
Don't set galaxy uid explicitly but use the next available one (accompanied with changes to the config for proftpd)
Bump freebayes to latest version. Resolves issues with NA12878 test calling
Merge branch 'master' of https://github.com/chapmanb/cloudbiolinux
Merge branch 'master' of https://github.com/chapmanb/cloudbiolinux