Improve bfCheckJavaPath performance testing

This commit should fix instabilites in the daily build of TestCheckJavaPath.
Successive calls to bfCheckJavaPath are not treated as independent. More
precisely, performance is only assessed for the third call and onwards.
cpp: Add model template, and generate and build model
cmake: Add functional check for cstdint
Update installation instructions for MATLAB

- Point at the bfmatlab.zip bundle available from the downloads page
Improve readability of alternative script hyperlink
Separate the download link from the artifact names
Ignore trailing slash when reading fake directories

See ticket #11330.
Fake: make sure that files are always listed in alphabetical order

Since only the last file in multi-file SPW datasets is used to
determine dimensions, it's important to always use the last file
alphabetically.  Otherwise, plates, wells, and/or fields could be
ignored.

Fixes ticket #11330.
cpp: Correct ome/compat/cstdint.h include guards
Adding version checker error issue help
Merge pull request #755 from sbesson/rebased/develop/matlab_downloads

Fix MATLAB installation section in the documentation (rebased onto develop)
xsd-fu: Revert unnecessary changes
Merge pull request #758 from hflynn/rebased/develop/upgrade

Adding version checker error issue help (rebased onto develop)
Eclipse: ignore gmaven

There is no connector or simple lifecycle mapping for the gmaven plugin
execution, and it does not seem to be necessary for developing code in
Eclipse, so configuration was added to the top-level pom.xml for m2e to
ignore gmaven.
cpp: Correct tab indentation
xsd-fu: Correct C++ template tab indentation
Merge pull request #750 from rleigh-dundee/cmake-stdint

cmake: Add functional check for cstdint
Merge pull request #733 from rleigh-dundee/cpp-model

cpp: Add model template, and generate and build model
cpp: Move cmake project root to top level

Moving the toplevel CMakeLists.txt to the project root permits the
project root to be used by cmake directly.  This permits proper
paths to docs, components, etc. to be used.
cpp: Fix comments and indentation