passed tests
fixed a units bug with netcdf reporter
added new topology subsetting code
added atomSubset'
added a comment
fix the changed names in performance testing
Cleaned up the dcd interface
added atom_indices subset reading to the DCD file at the cython level
fix the performance code to use the new dcd reader
removed stuff
sketch
added some biolerplate
code passes tests
incorporate upstream changes from simtk/openmm's pdb reader. these are minor
more from upstream
emit error instead of formatting wrong pdb file
Merge pull request #88 from rmcgibbo/pdb-fixes

Pdb fixes
Merge pull request #81 from rmcgibbo/netcdf-reporter

NetCDF reporter
merge cleaner-dcd-interface
critic ordering bugfix