SCHTUFF
Merge pull request #12 from anas-ambri/anas-branch

Anas branch
Added important string functionality, cutsite detection and annealing fixes.
Added new JS and a class for later purposes
The same as last commit
Updated tickets
parametrized arm lengths + [concentrations]
Added tests, fixed bugs found by Tests
changed regex from clean input to delete all whitespace
Changed candidate generator to specifiy where in the candidate the cut-seq was designed
Fixed annealing temperature to ommit the C in GUC
SVN didn't let me commit these files last time
Merge branch 'master' of https://github.com/anas-ambri/HammerTime
Merge branch 'master' of https://github.com/anas-ambri/HammerTime into anas-branch
Merging conflicts