Merge pull request #1283 from WormBase/staging

Staging
top navigation work (make gbrowse more prominent)
tooltip work - make sure remains on top
cache data structures
legend added to sequence pop-up
js callback issue
Merge pull request #1305 from WormBase/staging

Staging
Issue reporting and gbrowse config
Deleted transcript type mapping #1603
Update test template for case chages es in b3199fab5cdb07c56e29f50f046f382535e7bc9d
Added log output in case the WormBase release version number cannot be determined.
Updated some tracks where I could reverse engineer the correct GFF3 type/method assignment. Noted where GFF2 type/method pairs were most likely already wrong. #910
Issue #1603
* Sequences table renders on ncRNA pages
* Sequence lengths display correctly for pseudogenes in gene page sequences table.
* Sequence table columns renamed
* Lengths display correctly for pseudogenes in sequence table
Merge branch 'staging' of github.com:WormBase/website into staging
Removed GFF2 feature setting. Replaced by GFF3 type/source pairs. #910
pseudogene tests #1603
Changed feature filtering from GFF2 to GFF3 based track data. #910
Merge branch 'staging' of https://github.com/WormBase/website into staging
Sequence tests #1603
Added comments to the Rserve client Ruby script, so that it is easier accessible for Perl coders. #885
Historical_gene additions
* Antibody, Expr_pattern, Interaction, Transgene, Wbprocess
* all shown in Overview widget
* #1430
Update disease test
* 7 genes returned, not 4
Historical_gene additions
* update to handle multiple historical genes
* add tests
* tests for: antibody, expr_pattern, interaction, transgene
* #1430, #1725
Main config files of A. suum to B. brenneri updated for GFF3. Added extra feature type to GFF3 gene models config file. #910
Merge branch 'staging' of github.com:WormBase/website into staging
Added partial CDS entry in overview #1114