added code for layerOfNodes and hyperGraph
add sublime text project files for alien machine
new code

missPenalty from global to hypergraph class local
new HyperGraph structure

HyperGraph now consists of layers of nodes instead of just a big list of
nodes
added test.py
tried to fix some weird bugs on alien machine
test code is fixed

column of node locations is properly picked
fixed dummy2nodes code and added __del__ methods

Still there is some issue with not properly destroying the graph object