Remove empty directories
Add hcs_scripts info
Clarify directory usage
Add simple flake8 travis file
Minor fixes
Remove explicit directory listing
Merge pull request #3 from joshmoore/dir_cleanup

Script directory cleanup
Merge pull request #4 from joshmoore/enable_travis

Add simple flake8 travis file
Separate installation into two distinct sections

The existing README is not particularly well suited to people who
actually want to *use* a script repository rather than create their own
scripts via their own GitHub fork.  This commit improves that.

An HTTPS clone URL is also used for the user installation section.  This
URL is actually usable in a systems administration context where the
installation environment is not registered with GitHub.
Make (3) more readable
Revert "Make (3) more readable"

This reverts commit 12ebf7aef8daba87d885f132f6df100e4c48dcd2.
Add some more verbiage to (3)
Add an upgrading section
Be a bit more thorough with explaining directory names
Merge pull request #5 from chris-allan/install-separation

Install separation
Example Jython script

Jython must be installed locally. If there are any CLASSPATH issues,
you may need to write your own `jython` wrapper and put it first on
the classpath.

See
 * https://trac.openmicroscopy.org.uk/ome/ticket/918
 * https://github.com/openmicroscopy/openmicroscopy/pull/1324