Create and output run information

- Create file with default name run_info.txt
- Output the following:
  - command line typed by the user
  - commit id of the source compiled
  - random seed number used
  - start time
  - parameters and their values
  - end time
Merge branch 'master' of github.com:macroevolution/bamm

Conflicts:
	controlfiles/divcontrol.txt
Remove doc build files
Merge branch 'master' of github.com:macroevolution/bamm