Fixed bug in ${fluxDir}.
Merge pull request #25 from kantale/master

changes in GWAS and Imputation_minimac pipelines
Updated GAF workflows for redployment on gaf.gcc.rug.nl.
Merge pull request #26 from pneerincx/master

Fixed small bug in handling of temporary "fluxDir" dirs and updated GAF workflows for redeployment on gaf.gcc.rug.nl.
Merge pull request #27 from kantale/master

Added protocol to merge PED/MAP files
added templates parameter to CreateInhouseProjects.ftl
Merge pull request #28 from ljohansson/master

added templates parameter to CreateInHouseProjects.ftl
Updated walltime in parameters
Updates on in-house pipeline. Fixed bug in indel merging, now uses fasta index as input to sort output on.
Improved permission and error handling in the NGS_de_novo_assembly workflow.
Merge pull request #29 from freerkvandijk/master

Updated walltimes in impute2 pipeline and fixed small bug of missing Fasta index file for InDel calling in the alignment and variant calling pipeline
Merge pull request #30 from pneerincx/master

NGS_de_novo_assembly workflow improvements
Moved step to create per sample final report files (with array data) to new GAF workflow and removed outdated NGS_data_archiving workflow.
compute4/NGS_de_novo_assembly/protocols/Abyss.ftl
Fixed listing of FastQ input files per library when there is only one.
Merge pull request #31 from pneerincx/master

Updated GAF workflow to create array final reports per sample.
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines