Merge pull request #318 from melissalinkert/pr201-develop

PR 201 on develop
ND2: check the array size before allocating an array

See
http://lists.openmicroscopy.org.uk/pipermail/ome-users/2012-December/003484.html
ImageInfo: do not allow the ImageViewer to close the reader

Fixes #10076.
FV1000: better handling of renamed files

Fixes #9851.
Only use a MinMaxCalculator if we need the min/max values

MinMaxCalculator imposes a substantial overhead on calls to openBytes,
so avoiding it when possible means that non-autoscaled images (e.g.
virtual stacks) will open more quickly.
Minor cleanup of loci-plugins tests

Includes removal of commented-out code, proper logging usage, and a few
speed improvements.
Prevent int overflow in sample count calculation

Fixes #10050.
ND2: catch potential long overflow

d79a091 should have included this.
Merge pull request #321 from melissalinkert/sprint3-bug-fixes-develop

Sprint3 bug fixes develop
Merge pull request #323 from sbesson/rebased/develop/extlinks

Extlinks review (rebased onto develop)
merge develop --exclude conflict needs-fixes broken: PR 317 (Add support for Inveon data)
merge develop --exclude conflict needs-fixes broken: PR 319 (Add support for JPEG-2000 compression with code 34712)
merge develop --exclude conflict needs-fixes broken: PR 320 (ImageJ plugin option improvements)
merge develop --exclude conflict needs-fixes broken: PR 325 (Return Bio-Formats version in bfCheckJavaPath() (rebased onto develop))
merge develop --exclude conflict needs-fixes broken: PR 326 (Sprint 4 bug fixes (rebased onto develop))
merge develop --exclude conflict needs-fixes broken

Repository: openmicroscopy/bioformats
Updating 96c615b..bf12f46
Merged PRs:
  # PR 317 melissalinkert 'Add support for Inveon data'
  # PR 319 melissalinkert 'Add support for JPEG-2000 compression with code 34712'
  # PR 320 melissalinkert 'ImageJ plugin option improvements'
  # PR 325 sbesson 'Return Bio-Formats version in bfCheckJavaPath() (rebased onto develop)'
  # PR 326 joshmoore 'Sprint 4 bug fixes (rebased onto develop)'

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