Reorganisation of the preprocessor + tests for lastz preprocessing
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Fix.
Fixed preprocessor
Fixing lastz masker working with large numbers of chunks
Repeat masking
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Changing default memory of lastz masking jobs.
Raising min memory consumption of jobs to take advantage of memory on
ku cluster. Also fixing bug in covered_insteals script and removing
some unnecessary code.
Changing default kill timeout for the waiting until a ktserver dies.
Making changes to default lastz repeat masking parameters.
Fixing the ktserver kill code to not wait unnecessarily, and fixing
the preprocessor to work with larger numbers of chunks.