Adds NAD related detectors.
Adds Reaction Motif detectors. Currently, shared reactant-products and self reactions.
Adds the reconstruction cleaners for NAD related and auto reactions.
Merge branch 'release/1.0.3' into develop
Refactors the detection classes into NAD and autorxns packages. Moves to 1.0.3 SNAPSHOT.
Merge branch 'develop' into feature/detectionDucplicates

Adds test for reaction motif detectors.

Conflicts:
	pom.xml
Adds merging support for NADP and NAD to NAD( P ).
Merge branch 'feature/detectionDucplicates' into develop
Avoid producing an image file when no reactions where found.
Avoids colon in image result file.
Adds option for layout generator, for general nice layouts.
Introduces tracking class for depths used for each query. This includes the method to fall back on a particular depth (due to a high number of reactions).
Fixes bug in which there was not output if the output directory didn't exist.
Moves to 1.0.4
Merge branch 'release/1.0.4'