Upgrade to the latest point release of GATK protected
Automated script for preparing cosmic resources from latest version for GRCh37 and hg19. Update download to retrieve new versions
Add documentation about minimum recommended image sizes for building on Amazon. #130
update cortex version to 1.0.5.21
Merge pull request #131 from xiaojay/master

update cortex version to 1.0.5.21
Avoid double install of bamtools in ngs_pipeline, prefer brew version
Bump freebayes version with fixes for vcflib compile errors
Avoid explicit installation of distribute, which is no longer supported. Fixes #132
Added rn5 to biodata.
Added fallback mechanism for ensembl -> ucsc conversion.
Fixed capitalization of canFam3.
Skip R library installs if Rscript not present. Provide better tools to search for Rscript. chapmanb/bcbio-nextgen#176
Install expat library for cmake dependency. chapmanb/bcbio-nextgen#174
Fix broken yolk installation. Provide automated fix for distribute if stuck on broken version. Fixes #134
Added disambiguate to bionextgen.
Ensure install directory library path found during builds to prevent missing library errors in emboss. Fixes #135
Use cloudman meta installation target instead of proftpd and sge specific ones. Meta target installs users and configures cloudman first. Fixes #136
Merge branch 'master' of https://github.com/chapmanb/cloudbiolinux