Bumped to version 0.0.17. preprocessCoverage() now uses the groupInfo argument and if not NULL, it will calculate the group mean coverage. This information is then used in calculatePvalues() to get the region mean group coverage and the log2 fold change (using group 1 as reference). generateReport() and basicExploration.Rmd have been updated to simplify the report, improve style, add interpretable information (missing: MA style plots).