BUG: 3241 Fix transform not applied to volume when scene is read from a file

When a scene is loaded, vtkMRMLScene::UpdateNodeReferences doesn't handle event registration.
Except for vtkCommand::ModifiedEvent, any other events need to be registered via OnNodeReferenceAdded API.
Fixes #3241

From: Yuzheng Zhou <yuzheng.zhou@kitware.com>

git-svn-id: http://svn.slicer.org/Slicer4/trunk@22343 3bd1e089-480b-0410-8dfb-8563597acbee