Updated the publications page to incorporate papers and presentations since 2010.
Remove this now obsolete implementation.

Also, we should create the downloads dynamically, so that they are
fresh, rather than leaving outdated files.
Update deploy script.

This script should be a bit more helpful than it was previously.

 * Now utilizes 'pv' to give a status of how long it will take to upload
 * Now automatically builds documentation
 * Now automatically creates temoa.py and example_data_sets.zip