Added a version 3 branch to working on the re-engineered HBL syntax and library functions and cleaning up the library (basically delete all the old template batch files and start from scratch
Refactoring _TranslationTable, global variables into globals.cpp, utility functions into helperfunctions, starting to remove ifdefs for deprectated targets
Removing old GUI files
Updating CMakeLists.txt
Restoring needed resource files for QT mac app
Fixing some typos in HY_TRANSLATION_TABLE.. constants; adding OPTIMIZATION_PRECISION values to TwoSequenceTest.bf
Fixed an issue where void _String::Insert (char c, long pos) with pos > sLength would cause memory ovewrites
Fixed an issue where void _String::Initialize where existing sData would be leaked
Fixed memory leak/smash issues caused by calling append-type functions on non-buffered (i.e. not allocated using _String (UL,true)) strings
Started unit/coverage gtests for TranslationTable
Misc bug fixes, code tweaks
Removed duplicate defintions of MEMORYSTEP, replaced HY_TRANSLATION_TABLE* definitions with hex (because the original binary are non-standard)
Applied patch #145 to the V3 branch
Removing KMP search. Not being used
closes #146
Some minor bug fixes
closes #151
Merge branch 'v3' of github.com:veg/hyphy into v3
Merge pull request #154 from stevenweaver/v3

V3
A more informative error message when trying to create a tree with duplicate node names