removing build 36 defaults
Refactor new sv annotator to put different types of annotation in different modules
Merge branch 'updated2' into gb_master
Fix 'genome model define reference-alignment' default

A new feature of UR is the ablility to add objects as defaults, one side
effect of that is that UR actually cares what you put as defaults and
uses those defaults to look up the value.  The old default for
reference-sequence was just the name of the reference sequence... Then I
changed it to be {name => 'some_name'}.  All seemed well until the
Define-docs.t test fails and you find out that the hash memory address
was being displayed and therefore hashes are disallowed as default
values.  In the end I just replaced the name with the id.  It is less
understandable to an end-user but I don't know what else to do.
updated ur submodule to 259c166
Added a new command to gather the indel_variant_list and detected indels together and split them into small and large indels.
Merge branch 'validation' into gb_master
remove reference genome default