Added subfamily info to sequence names
Remove text between parens in taxon names (previously I was just removing parens)
first commit
Frameshifts are now written to separate files
Frameshifts are now written to a separate file
First commit
Wrote custom mega output writer that does not truncate names
fixed error in command line argument parsing
added autodie fore file opening and closing
first commit
Updated with info about making distance plots, including extracting MLST loci