This should be eliminated because the math behind this option was not
correct. We will reimplement a version of this later using one of Fishers
transforms.


On Tue, Aug 27, 2013 at 3:57 PM, Yoshiki Vázquez Baeza <
notifications@github.com> wrote:

> In scripts/otu_gradient_correlation.py:
>
> > +    #     'this parameter gives you the option of collating those resulting '
> > +    #     'values. For example, if your input directory contained multiple '
> > +    #     'rarefied OTU tables at the same depth, pass the -w option '
> > +    #     'in order to find the average p-value for your statistical test '
> > +    #     'over all rarefied tables and collate the results into one file. '
> > +    #     'If your input directory contained OTU tables '
> > +    #     'that contained different taxonomic levels, filtering levels, etc '
> > +    #     'then do not pass the -w option so that an individual results file '
> > +    #     'is created for every input OTU table. [default: %default]')]
> > +
> > +script_info['version'] = __version__
> > +
> > +def main():
> > +    option_parser, opts, args = parse_command_line_parameters(**script_info)
> > +
> > +    bt = parse_biom_table(open(opts.otu_table_fp))
>
> [image: :question:]
>
> —
> Reply to this email directly or view it on GitHub<https://github.com/qiime/qiime/pull/1091/files#r6019727>
> .
>