ND2: populate the channel color

Fixes #10530.
ND2: fix T size adjustment

Fixes #10526.

Conflicts:

	components/bio-formats/src/loci/formats/in/NativeND2Reader.java
Fix compile errors
Merge pull request #455 from melissalinkert/rebased/develop/scanr-well-indexes

ScanR: fix well linkage issues (rebased onto develop)
Merge remote-tracking branch 'origin/develop' into rebased/develop/more-nd2-fixes

Conflicts:
	components/bio-formats/src/loci/formats/in/ND2Handler.java
	components/bio-formats/src/loci/formats/in/NativeND2Reader.java
Build fixes from Roger
adding partner projects to menu
Merge pull request #459 from hflynn/rebased/develop/FLIMfit_menu

Adding partner projects to menu (rebased onto develop)
Additional ivy changes from Roger
Further build changes from Roger
merge develop -D org -I include -E exclude: PR 351 (Add SPW support to FakeReader)
merge develop -D org -I include -E exclude: PR 424 (Specification changes for 2013-06 release)
merge develop -D org -I include -E exclude: PR 427 (xsd-fu: Generate sources at build time)
merge develop -D org -I include -E exclude: PR 433 (More .nd2 fixes (rebased onto develop))
merge develop -D org -I include -E exclude: PR 457 (Fix OME Model documentation link in the plonematch layout (rebased onto develop))