Work on forcing files to be included in a bundle.
Refactor deploy.makefile command names.
Refactor deploy.script command names.
Refactor deploy.bundle command names.
Refactor deploy.test command names.
Refactor private deploy commands to use a dly prefix.
Initial work on integrating with autoreconf -i so that when a configure
file is excluded using a .gitignore autoreconf -i is invoked in the
bundle contents directory to ensure that the bundle includes the
configure file.