Merge branch 'master' into Matt's-branch
End of day.
Moved utility functions into 'utils' folder to reduce clutter.
Added a 'save' option for Dima that saves the 'results' struct.
Merge branch 'John's-branch' of https://github.com/Technochrome/Tsunami-REU-2013-code- into John's-branch

Conflicts:
	toConstantTime.m
	trapModel.m
.savedTrapModel is huge, and I'm trying to remove it from the repo. I'm struggling at that.
runModel has been refactored out.
- Whole tree has been fixed; I didn't need to do any commits
enhanced 'readOptions' to support cell arrays and structures on top of string-value pairs
Moved default options out of main file,
Closed most open issues
Commit after removing the .savedTrapModel from the tree
Merge branch 'John's-branch' into Matt's-branch

Conflicts:
	General Prabolic case/Save video.txt
	General Prabolic case/eta_0.m
	General Prabolic case/parasolution.m
	captureFrame.m
	endMovieCapture.m
	eta_0.m
	startMovieCapture.m
	toConstantTime.m
	topViewOfWater.m
	trapModel.m
Merge branch 'Matt's-branch'