first try, have most of the code but not yet functional
it works but a lot more is going to change.
more working code + outline for other functions. still far from done.
mostly working, but something is causing lots of duplicates in the output file.  Recursion also still needs to be implemented.
Duplicates issue fixed
fixed issue with updateAuthor function
json code is working, some bugs fixed in author dict updating functions
Merge pull request #1 from jacthinman/refactor

Refactor
Writing plain text for importing to cytoscape