Updated the install docs on LinuxMint 13
Updates to the admin guide for packaging without install and getting stderr and stdout from our tools.
Merge branch 'develop' into feature/BatchInjectTakeTwo
Changed 'skip' log message in SequencerRun; added necessary parameters when creating RunInfos, SampleInfos and LaneInfos in the BMP.
Merged problematic changes
Refined the output of the Metadata and BatchMetadataInjection plugins; added a record option to BMI; BMI bug-fixing on null pointers; In SampleIDResource, fixed SeqWare bug SEQWARE-1559 'All parents of a sample mysteriously disappear'