Cleaned up doc preparation files.
Added tutorial making files.
Revised sphinx make and configuration files.
Updated tutorial template and make/conf files.
Updated documentation and tutorial setup files.
Moved tutorial starter into a shell script.
Updated tutorial startup and added a tutorial on writing tutorials.
Revised tutorial and developer pages.
Added new style tutorials and updated tutorial setup files.
Updated tutorial and added option to make all tutorials.
Added a function to trim prody package/module names from functions/classes.
Cleaned up configuration file.
Updated ProDy tutorial files.
Updated configuration files.
Updated ignore list.
Normalizing pdb file paths.
Added log message.
Added some doctests.
Fixed a problem with external link configuration.
Updated tutorial make files.