add content_type and reference to feature list default lister since they are essential to making new ones
cleanup of how feature lists access proeprties to update
calculate the SquareDancer.pl internal script location dynamically
calculate pindel location dynamically
make Genome::Model::Event sorting in Genome::Model::Build tolerant of text IDs.
updated logic to handle newer illumina data even if it is in fastq format (not BAM), and it is not imported
commit modules for manhattan plot generation.
updated Genome/Sys/Log.t to handle prefixes to the expected call stack in the call stack test
fixed test which had us running sol2sanger on illumina (not solexa) quality scale data (bad)
restored old quality converter resolution logic: fix on another commit which is not pure refactoring
Merge branch 'master' of ssh://git/srv/git/genome
Merge branch 'master' into gms-host
Merge branch 'gms-host' of ssh://git/srv/git/genome into gms-host