Go back to using GetOpt::Long
Switch to using knit2html rather than pandoc

Use knitr_bootstrap files and knit2html to generate formatted
reports rather than using pandoc.
Use color brewer as ggplot defaults
Use hashed arguments rather than explicit variables
Changes for Ultisnips neocomplcache compatibility
Move inputrc into the correct location
Remove unnecessary keybinds, change to compatible theme
Rstudio markdown function and colorblind palette
Add TODO file
Change knitr_bootstrap to a submodule
Add colemak xmodmap
Add grep_header function to grep keeping the header
Small changes