[tests] Cleanup initialization of test suffixes.

 - Instead of setting the suffixes in a bunch of places, just set one master
   list in the top-level config. We now only modify the suffix list in a few
   suites that have one particular unique suffix (.ml, .mc, .yaml, .td, .py).

 - Aside from removing the need for a bunch of lit.local.cfg files, this enables
   4 tests that were inadvertently being skipped (one in
   Transforms/BranchFolding, a .s file each in DebugInfo/AArch64 and
   CodeGen/PowerPC, and one in CodeGen/SI which is now failing and has been
   XFAILED).

 - This commit also fixes a bunch of config files to use config.root instead of
   older copy-pasted code.