Added activation JSoar tests.  Also fixed a base-level incremental update policy bug.
First working version of rewritten factorization test.  Does not include SMem or EpMem operators yet.  Chunking works with it in CSoar though.
Renamed headers to be correct in the Factorization Stress Test.
Added EpMem specific code.
Added SMem Specific Rules
Added EpMem SMem Combination Test.
Refactored Factorization Stress Test.  Also fixed EpMemSMemChunking test (work around).
Added a check operator for the first 20 factorizations and the last factorization object.
Added options for child jvm.
Added ability to run the performance testing framework tests in separate JVMs.
Fixed duplicate options with same short hand.
Added passing number of decisions to run for on the command line for the performance testing framework.
Fixed bug related to trying to print LTIs.  Also fixed a bug regarding having spaces in your source commands.
Fixed memory leak.
Fixed preference reference issue.  Missing an add reference in some obsecure edge cases.
Made JSoar more like CSoar for the smem command and agent.initialize()
Made SMem command more like CSoar.  You can always set the parameters even when the db is open.  Those changes just won't apply until you do an smem --init.
SMem Factorization Stress Test as a functional test.
Added CSoar read db test to SMem.
Added EpMem read csoar db test.