Merge pull request #139 from stefan-kurtz/sk

Added function to read file content into RAM without using mmap
add tests for -parts and -memlimit
Merge pull request #140 from Garonenur/genomediff

add tests for -parts and -memlimit
make Lua use mkstemp() instead of tmpnam()
Merge pull request #141 from satta/master

make Lua use mkstemp() instead of tmpnam()
use a shared copy of the D.mel genome in LTRd tests
Merge pull request #142 from satta/ltrd_test_redundancy

use a shared copy of the D.mel genome in LTRd tests
added sized multieoplist

and copy function
changed variable name
fix splint and coding style
Merge pull request #143 from mbruns/multieops

Multieops
Merge pull request #144 from Garonenur/mbruns

fix splint and coding style
copy method returns pointer of copy

src-check
Merge pull request #145 from Garonenur/mbruns

copy method returns pointer of copy
cosmetics
remove executable bit for expat files
fix complaints from clang scan-build

found with clang versions > 3.2
Merge pull request #146 from Garonenur/dw

cosmetics and scan-build errors fixed
replace unsigned long by GtUword in two ruby scripts
Merge pull request #147 from ggonnella/scripts-uword

replace unsigned long by GtUword in two ruby scripts