sdrf class has a cghub_id_file so we do not need to pass it around
archive_name is a property on sdrf object so it does not need to be passed around
Merge branch 'copy' into gb_master
add unit tests for all command tools used in smallRna pipeline
Use the current Perl to run the breakdancer config.
Merge branch 'master' of ssh://git/srv/git/genome
little fix
Merge branch 'master' of ssh://git/srv/git/genome