Release 1.102

git-svn-id: http://svn.code.sf.net/p/picard/code/trunk@1589 8bce386e-0d6e-43e0-b1ca-608082c0432d
Optionally compute MD5 on the fly when writing FASTQ in IlluminaBasecallsToFastq and SamToFastq, and write to companion file.

git-svn-id: http://svn.code.sf.net/p/picard/code/trunk@1592 8bce386e-0d6e-43e0-b1ca-608082c0432d
For VCF and BCF writing, allow the caller to provide an IndexCreator instead of using the default.

git-svn-id: http://svn.code.sf.net/p/picard/code/trunk@1593 8bce386e-0d6e-43e0-b1ca-608082c0432d
Do not return non-zero exit status in SamToFastq if unmatched mates found and validation_stringency is not STRICT.

git-svn-id: http://svn.code.sf.net/p/picard/code/trunk@1594 8bce386e-0d6e-43e0-b1ca-608082c0432d
Merge remote-tracking branch 'upstream'