clean workspace
clean
Delete .DS_Store
Delete .DS_Store
Delete .DS_Store
clean up the workspace
testing bwa mem
bwa mem online!!!
sing-end for bwa-mem
sing-end and paired-end for bwa-backtrack
add main class, user can start mem or backtrack from the main class.
add usage
add MANIFEST.MF
add .jar file
works now for small data
will cause problem when running for big data
has memory issue
Merge remote-tracking branch 'origin/Yukun'

Conflicts:
	.DS_Store
	.idea/libraries/lib.xml
	GENE.iml
	build/classes/BWA/BWAIndexMapper.class
	build/classes/BWA/BWAReducer.class
	build/classes/genelab/Conf.class
	build/classes/genelab/GENE.class
	build/classes/sandbox/WordCount$IntSumReducer.class
	dist/GENE.jar
	nbproject/build-impl.xml
	nbproject/genfiles.properties
	nbproject/project.properties
	nbproject/project.xml
	src/BWA/BWAIndexMapper.java
	src/genelab/Conf.java
	src/genelab/GENE.java