Merge pull request #1 from waltherg/c44d249a3b8ee3291f693fd9a87f8c8f22883068

update long description because distutils does not handle markdown
Merge pull request #2 from waltherg/master

correct names of binary scripts
Merge pull request #3 from waltherg/master

point out INSTALL
Merge pull request #4 from waltherg/master

add $ to designate prompt
Merge pull request #10 from waltherg/master

Only print up to 20 discovered fragments.
Merge pull request #11 from waltherg/master

Fix an indentation typo
remove unused variables
tidy up comments
create subgraph components based on fragment name (i.e. species and reaction indeces)
create negative paths properly: the second arc of negative edges does not need to correspond to an edge in the fragment
create negative paths properly: the second arc of negative edges does not need to correspond to an edge in the fragment. resolves #5
create negative paths properly: the second arc of negative edges does not need to correspond to an edge in the fragment. resolves #5
Merge pull request #12 from waltherg/use-fragment-for-subgraph-components-debugged

Use fragment for subgraph components
add reverse direction of negative paths to path graph only if edge of resulting reverse negative path is in the fragment
Merge pull request #13 from waltherg/use-fragment-for-subgraph-components-debugged

add reverse direction of negative paths to path graph only if edge of re...
Merge pull request #15 from waltherg/master

add MAPK mechanism