Several changes to haloplex pipeline. Adapter trimming and BWA mem now supported.
Bugfix in TrimAdapters protocol.
Small bugfixes in haloplex pipeline.
Bugfixes on haloplex pipeline
Implemented targeted PCR metrics + coverage into Haloplex pipeline.
Merge pull request #54 from kantale/master

Added impute2 pipeline for compute5
Added PCRtarget metrics to template.
Merge pull request #53 from freerkvandijk/master

Several fixes in HaloPlex pipeline
Added ploidy calling to Haloplex pipeline.
Added new variantannotator
Added RNA-seq STAR alignment pipeline
Merge pull request #55 from DashaZhernakova/master

Added RNA-seq STAR alignment pipeline
mkdir -p
updates star aligner
Merge branch 'master' of https://github.com/molgenis/molgenis-pipelines
Updates on haloplex pipeline.
small buf fix star
Merge pull request #56 from PatrickDeelen/master

update star aligner
shapeit phasing logging
Added RNA-seq genotype calling pipeline