update git ignore
Add plink bed support
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Added maven version number to imputation tool
Update impute2 to trityper
Added generic sex getter for samples.
Merge pull request #17 from PatrickDeelen/master

Update genotype reader and imputaton tool
Removed default parrallel tekst read in in DoubleMatrixDataset

Minor: added java doc to Normalizer correlation and checked PCA code.
Updated README.md help to install local jars
First implementation of variantQc genotype data

Not yet complete
Merge pull request #18 from PatrickDeelen/master

First implementation of variantQc genotype data
Updated DoubleMatrixDataset, Speed up and added test for correlation
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Merge pull request #19 from Bonder-MJ/master

Updated DoubleMatrixDataset and correlation
Implement variant hwe and callrate inc tests
Merge pull request #20 from PatrickDeelen/master

Implement variant hwe and callrate inc tests