Merge pull request #1076 from mtbc/trac-10727

fix #10727, so raw file bean can create empty files
Merge pull request #1036 from will-moore/copy_paste_rdefs_10673

Copy paste rdefs 10673
Merge pull request #1084 from will-moore/web-bugs-22nd-April

Web bugs 22nd april
Merge pull request #1002 from will-moore/thumbnail_figure

Thumbnail figure
Update submodules