Clean Command

Redundant with --clean, but I think a dev's instinct will be to run clean as a command, and not a flag.
Remove Flag
Cleaned Color
fixed issues with Ti.Current integration
Merge pull request #135 from jhaynie/master

fixed issues with Ti.Current integration
Merge pull request #132 from dawsontoth/clean

Clean Command
Note Compile Command Permutation
Ignore Some Windows Specific Files/Dirs
Fix ILDASM Ref
Windows, Not Win8
add sample script to do command line builds
Merge pull request #136 from mtnlife999/master

add sample script to do command line builds