Added file doc/notes/makefiles
Small changes to documentation.
Fixed bug in DdMd::Exchanger (test for groups that span 3 processors).
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Minor fixes to manual *.dox files.
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Changed name of configure script to setup.
Added configure file that can enable / disable features.
Adding -q query option to configure script.
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Modified configure script to set options.
Modified compiler.mk_r treatment of compilers and UTIL_MPI.
Fixed bug in configure -k option.
Documenting use of configure to (en|dis)able features.
Merge branch 'devel' of github.com:/dmorse/simpatico into devel
Edited dox files, moved compile-time options to user guide.
Improved -q output in configure script.
Changing navigation links in main doxygen pages.
Editing navigation links in html.
Fixing bug in DdMd::LammpsOrderedConfigIo
Merge remote branch 'origin/devel' into devel