add optional arguments to activate 'unpinnned end' when adding reads to a MultiReadMutationScorer. existing callers should be unchanged.
in preparation for CCS using MultiRead mode.
bug 20366

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 117580]
Fix slight run-to-run fluctuation of variant confidences

This resulted from iterating over a dictionary of items that were
ordered more or less arbitrarily.

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 117718]
Bump version to 0.4.1

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 117719]
Add author email, per Jonathan

[Bug 21925]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 117722]
Update COPYRIGHT file to contain our new "Clear BSD" license

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 117725]
Stamp the new copyright in all source files

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 117726]
Fix compiler warning

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 117727]
Update the version in setup.py

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/common/ConsensusCore/": change = 117741]