Fixed bug in apply external transformation
can process images sequentially
Merge branch 'master' of ssh://fiji.sc/srv/git/fiji
It is now possible to set a different offset for the registration
fixed bug for deconvolution with one block and GPU
fixed bug so that any filenames work
can load images sequentially for deconvolution
can provide psf
psf extraction is done during fusion
added interface for predeconvolution fusion
efficient sequential processing is available
topic-branches.sh: let the environment variable REMOTE override

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
download-launchers.sh: we can use --set-icon for the Windows icon now

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
download-launchers.sh: copy ./fiji from ./fiji-<platform>

... instead from ./ImageJ-<platform> (to help correct keep icons).

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
download-launchers.sh: no longer fix ij-launcher.jar

The idea is that even ij-launcher.jar should be handled by
Retrotranslator; besides, we do not ship ij-launcher.jar from the
Fiji update site and the ImageJ update site (which does ship said
.jar file) does not fix the classes anyway.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
fiji-compat: avoid instantiating a Menu in headless mode

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fiji Archipelago: Fixes to pom, separation of Archipelago from TrakEM2
Fiji Archipelago: Convert ClusterMessages from String identifiers to an Enum
Fiji Archipelago: Detect cancellation of OpenDialog
Fiji Archipelago: Added "started" state
Fiji Archipelago: Will throw ExecutionException whether or not the Future has been finished
Fiji Archipelago: Updated Cluster UI, added ability to File->Open .cluster files
Fiji Archipelago: Ignore BEAT messages in RX/TX, handle specific IOExceptions