No need to add the path manually; note that a new shell can be created too.


git-svn-id: https://svn.salilab.org/imp/trunk@17166 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Slightly clearer example.


git-svn-id: https://svn.salilab.org/imp/trunk@17167 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Don't include OptionParser in every module that uses the kernel.


git-svn-id: https://svn.salilab.org/imp/trunk@17168 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Reenable documentation of Python code.


git-svn-id: https://svn.salilab.org/imp/trunk@17169 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Make sure IMP_TEST_SETUP is set *before* including the CMakeLists that use it.


git-svn-id: https://svn.salilab.org/imp/trunk@17171 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Don't try to document applications (which get symlinked into build dir).


git-svn-id: https://svn.salilab.org/imp/trunk@17172 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Restore missing docs.


git-svn-id: https://svn.salilab.org/imp/trunk@17173 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Fix documentation errors.


git-svn-id: https://svn.salilab.org/imp/trunk@17174 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
cmake's TO_NATIVE_PATH confuses some generators when handling paths containing
whitespace, so pass cmake paths rather than native paths to our tools.


git-svn-id: https://svn.salilab.org/imp/trunk@17175 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Update files.


git-svn-id: https://svn.salilab.org/imp/trunk@17176 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Make sure that users of RMF can find HDF5 too when they compile against it.


git-svn-id: https://svn.salilab.org/imp/trunk@17184 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Comments must start with ; to work with all boost versions.


git-svn-id: https://svn.salilab.org/imp/trunk@17185 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Speed up benchmark by considering fewer transforms.


git-svn-id: https://svn.salilab.org/imp/trunk@17186 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Ensure number of rigid bodies is consistent with the number of particles.


git-svn-id: https://svn.salilab.org/imp/trunk@17187 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Set timeouts for benchmarks.


git-svn-id: https://svn.salilab.org/imp/trunk@17188 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Make sure that python is propagated.


git-svn-id: https://svn.salilab.org/imp/trunk@17189 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Mark Python-only classes as such.


git-svn-id: https://svn.salilab.org/imp/trunk@17191 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Run for less time in fast mode.


git-svn-id: https://svn.salilab.org/imp/trunk@17192 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Documentation cleanups.


git-svn-id: https://svn.salilab.org/imp/trunk@17193 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Flesh out description from the PDF manual.


git-svn-id: https://svn.salilab.org/imp/trunk@17194 e91f8c7b-0e32-4433-a9ac-4502d39a4eab