Clearing out unnecessary files

Removed no longer needed files, moved some, renamed others.
Complete rewrites of jQuery scripts

Rewrites of all scripts, for better consistency and portability.

Added helper file to house re-used functions and variables.

Added better notes, including HTML markup patterns and file
dependancies.
Moved uncompressed scripts to /scripts

Moved scripts for consistency and to allow codekit to build minified
versions in /js
Added baseline-5.png

For base 10 line heights
Renamed index.html

Renamed from index.shtml, to reflect new workflow (using codekit).
Minified versions of all rewritten scripts