Check headerline size before get the sample names
VCFRUN: Added provisional code for a nuew Generic Runner
commons: package renamed. New utils packages added
Merge branch 'develop' of github.com:opencb/java-common-libs into develop
New methods for checking that a path corresponds to a file
Proper README for the project
Added ObjectMap,QueryOptions & QueryResults to containers
Merge branch 'develop' of github.com:opencb/java-common-libs into develop
Added a new field to QueryResult
Added a new generic type to Runner
Merge branch 'developAleman' into develop
Renamed VcfFilterList to SortedList
Added a Generic type to SortedList
Reorganize code. Moved some classes from bioformats to Commons
Created a Generic Filter. Now VcfFilter extends to this Generic Filter (Filter).
Merge branch 'feature/reorganizeCode' into develop
Removed a bug int EffectCalculator
First version of the class representing a format independent alignment
Alignment class constructor signature redefined
Merge branch 'develop' of github.com:opencb/java-libs into develop