Bumped versions for 1.25-SNAPSHOT
BARNA-332 maxgap parameter added to FluxCapacitorSettings
MIN_ILEN
Merge branch 'develop' of http://sammeth.net/fisheye/git/barna into test

Conflicts:
	barna.capacitor/src/main/java/barna/flux/capacitor/reconstruction/FluxCapacitor.java
	barna.capacitor/src/main/java/barna/flux/capacitor/reconstruction/FluxCapacitorSettings.java
BARNA-331 fixed
Added bam files with mixed read type
Add test for mixed read type in bam files
Add mateFlag property and get build read name using it
Implement getter for mateFlag
Add samFlag property to Mapping interface
Update SAM iterators to new SAMMapping implementation
Change getter method for readName
Update SAM iterators - do not use attributes
Refactor barna.io.rna to barna.model.rna
Fix testName
Update BED mappping to new Mapping interface
Update to new Mapping interface
Fix value for asense
Add init()
Fix read name test