Extracting functions for writing VCF statistics
TDT test memleaks removed, VCF files with header larger than batch size accepted in gwas runners
Including samtools and cprops
Using static linking of: argtable, cprops, libconfig and samtools
Using dependencies included INSIDE bioinfo-libs and common-libs
Whole gene filter creation moved to gene_filter_new function (was in shared_options)
Gene filter option added to hpg-var-effect, some memleaks removed
Gene filter option added to hpg-var-gwas
Merge branch 'including-static-libs' into next
Removed inclusion of cprops linked list header in all but TDT test
SConstruct properly adapted to new library configuration
Family usage of linked_list instead of cp_list in association tests
TDT test used linked_list_t instead of cp_list
assoc_runner sorts samples using khash, not cp_hashtable
tdt_runner sorts samples using khash, not cp_hashtable
hpg-var-vcf/stats: Mendelian errors per sample
Split by coverage: Work in progress
VCF split by coverage
hpg-var-vcf/filter: By being an indel or not
hpg-var-vcf/filter: Performance improved when running a filter chain that involves calculating statistics (about 2x)