Fix for improper ORE identifiers in DataONE Resource Maps

https://redmine.dataone.org/issues/3917
Improve debugging when re-indexing journals
Improve error output when reindexing journals
Enable integration for PLoS Genetics
Add PLoS Genetics to integration table
1762:Remove asterisks from indexing and fix the null journal full name
Merge pull request #362 from datadryad/integration

Integration
1762:fix the accepted journal manu script number box
Merge branch 'dryad-master' of https://github.com/datadryad/dryad-repo into atmire-1762-4

Resolve Conflicts:
	dspace/modules/api/src/main/java/org/dspace/submit/utils/DryadJournalSubmissionUtils.java
Curator reports to identifify insufficient DataONE metadata

Tweaks to CLI logging for curation tasks
Clean up source files
Better handling of DOIDbSync where DOI is not found in doi.db
Removed http call to /doi and replaced with direct Minter call

It is unclear why the DOIDbSync was calling the DoiController (http://.../doi) to add entries to the DOI.db
DoiController is not configured to update the DOI.db and does not respond to the query parameters provided - always returns 'DOI not present.'
Update email wording
Update Dryad 3.1 schema to not require a value for dcterms:references
Merge pull request #364 from datadryad/atmire-1762-5

Atmire 1762 5 - Correct Issues with removal of "*" from Journal Selection Dialog
Update code for BMCEvolBiol

At their request
Add python script for validating objects from DataONE MN API
Prepopulate dictionary
Merge pull request #369 from datadryad/email-update

Update email wording