[FIX, TEST] Added tests for open and save. 


git-svn-id: http://svn.seqan.de/seqan/trunk@12887 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixed a problematic test.


git-svn-id: http://svn.seqan.de/seqan/trunk@12890 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixed a wrong substitution.


git-svn-id: http://svn.seqan.de/seqan/trunk@12894 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixing some unsigned/signed warnings.

git-svn-id: http://svn.seqan.de/seqan/trunk@12896 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixing const/non-const return type issue in FM index.

git-svn-id: http://svn.seqan.de/seqan/trunk@12897 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Some more checking, improved `swap` usage in RazerS 3.

git-svn-id: http://svn.seqan.de/seqan/trunk@12898 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Fixing compile error in SAM reader with C++11.

git-svn-id: http://svn.seqan.de/seqan/trunk@12899 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Working around C++11 issue in `sam_reader.h`.


git-svn-id: http://svn.seqan.de/seqan/trunk@12900 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] More initialization in `getTerminalSize()`.


git-svn-id: http://svn.seqan.de/seqan/trunk@12902 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] fixed missing const on reference parameter

git-svn-id: http://svn.seqan.de/seqan/trunk@12903 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX, INTERNAL] index_fm: _goDownString() order reversed, representative() overloaded for CompressText specialization

git-svn-id: http://svn.seqan.de/seqan/trunk@12910 e6417c60-b987-48fd-844e-b20f0fcc1017
[COMMENT] Some more comments for snp_store.

git-svn-id: http://svn.seqan.de/seqan/trunk@12911 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Updating test results for snp_store.

git-svn-id: http://svn.seqan.de/seqan/trunk@12912 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX, INTERNAL] index_fm: correct alphabet type also for StringSets

git-svn-id: http://svn.seqan.de/seqan/trunk@12913 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Disabled some test temporary.


git-svn-id: http://svn.seqan.de/seqan/trunk@12916 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] index_fm: representative specialization for StringSets

git-svn-id: http://svn.seqan.de/seqan/trunk@12918 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] index_fm: representative specialization for StringSets

git-svn-id: http://svn.seqan.de/seqan/trunk@12920 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Initializing variable in `index_fm_lf_table.h`.


git-svn-id: http://svn.seqan.de/seqan/trunk@12932 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX, FEATURE] Fixed the tests for the fm index iteraros and added the pathLabel function.


git-svn-id: http://svn.seqan.de/seqan/trunk@12936 e6417c60-b987-48fd-844e-b20f0fcc1017
[FIX] Suppressing errorneous bound warning in `chain_point.h` also in GCC 4.8.

git-svn-id: http://svn.seqan.de/seqan/trunk@12937 e6417c60-b987-48fd-844e-b20f0fcc1017