Print out NeighborInfo
Fix Split repeat: leave tandem repeat off
Add LongRead testcase for SplitRepeat
Add restrict split neighbor condition
Merge branch 'genomix/fullstack_genomix' into anbangx/debug-split-repeat
Merge pathmerge-randomSeed and splitrepeat-randomSeed into the same randomSeed
Make constant DISSIMILAR_THRESHOLD uppercase
Exclude text and graphviz output in .gitignore
Add some comments and some refactors based on code review
Use the whole directory in .gitignore
GenomixJobConf.RANDOM_RANDSEED should be GenomixJobConf.RANDOM_SEED
typo
Merge branch 'genomix/fullstack_genomix' into anbangx/debug-split-repeat

Conflicts:
	genomix/genomix-data/src/main/java/edu/uci/ics/genomix/config/GenomixJobConf.java
Merge pull request #34 from uci-cbcl/anbangx/debug-split-repeat

Anbangx/debug split repeat
Merge branch 'genomix/fullstack_genomix' into nanzhang/recover_tests_EdgeMap

# By Anbang Xu
# Via Anbang Xu (3) and anbangx (1)
* genomix/fullstack_genomix:
  typo
  GenomixJobConf.RANDOM_RANDSEED should be GenomixJobConf.RANDOM_SEED
  Use the whole directory in .gitignore
  Add some comments and some refactors based on code review
  Exclude text and graphviz output in .gitignore
  Make constant DISSIMILAR_THRESHOLD uppercase
  Merge pathmerge-randomSeed and splitrepeat-randomSeed into the same randomSeed
  Add restrict split neighbor condition
  Add LongRead testcase for SplitRepeat
  Fix Split repeat: leave tandem repeat off
  Print out NeighborInfo