Adding method to show residues and shade based on quality in track style.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15099 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Commenting out unnecessary code for now.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15100 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Adding method to set and get selection.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15101 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Adding actions for use quality score and mismatches.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15102 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Adding option turn on/off use of base quality.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15103 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Adding do not individually turn on/off residue mask.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15104 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Removing method to get selection.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15105 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Adding isselected and setSelected in individual class.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15106 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Get gviewer using method.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15107 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Use residue mask and shade based on quality score from style.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15108 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Adding option to turn on/off residue mask and shade by quality score.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15109 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Get action text from bundle.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15110 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Disable read alignment view popup listener.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15111 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Add a pixel to avoid lines in filled bar graph.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15112 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Renaming clamp to view method and variables.

git-svn-id: https://svn.code.sf.net/p/genoviz/code/trunk@15113 80d5a9c2-7d8c-4c9f-9369-4e03bca4d2bd
Merge remote-tracking branch 'upstream'