Retrieve_CITES.py script added to create a local CITES database including ncbi taxon_ids and species synonyms
Retrieve_CITES.py script now checks for synonyms
Retrieve CITES script now correctly implements TNRS, added a flowchart to the doc folder
Retrieve_CITES script now succesfully creates a .csv file with all CITES species and taxon identifiers (if present in genbank), blast_and_compare.py script Blasts user sequences and based on the CITES list determines if it is a protected species
the user can now specify the blast settings in the blast_and_compare.py script
Several fixes for the Retrieve_CITES and Blast_and_Compare scripts
Updated copy of the CITES local database, pipeline flowchart and the Retrieve_CITES.py script now behaves as intended
Added a force and avoid update CITES function to the CITES_check.py script, plus some general fixes
More bug fixes in the CITES_check.py script, not all parameters turned out to be passed on correctly to the subscripts