Bumped version to 1.7
Merge branch 'master' into develop
Merge branch 'master' into develop
Merge branch 'master' into develop
[GT-39] Fixed mem leak at gt.filter templates
updated docs and added quickstart guide
updated id p[arsing to handle non casava ids with spaces (GT-41)
added -l option as default for gem2sam and added paramter to the
pipeline (GT-40)
Added output folder check in pipiline run (GT-45)
Updated description for the no header paramter (GT-40)
Added --compact option for sam compact format (GT-46)
Fixed typo
fixed teh samtools sort memory paramter for non threaded version(GT-47)
updated build strategy to support Ci integration (GT-44)
added gem binaries to the clean step
Fixed tests
version name
Updated readme