COMP: Fixed typo in bibtex file.
ENH: Fixed building of examples

Pathing needed to be made flexible for
building in arbitrary directory paths.
ENH: Made better variable names

The variable names were only differentiated
by case, and this made it quite difficult
read the code.
ENH: Improved code shading.
ENH: Remvoed files that should be auto-generaged.
ENH: Use modern FindImageMagick paradigm
ENH: New pathing for finding Art.
ENH: Commen tout unused variable paths.
STYLE: Set python formatting consistency.

autopep8 --max-line-length=300 -i SoftwareGuide/Examples/RunExamples.py
SoftwareGuide/ParseCxxExamples.py
ENH: Force superbuild conformance.
ENH: Always build figures, and let python script develop the dependancies.
ENH: First mostly functional build of software guide with python.
STYLE: Choosing style for better code presentation

The code presentation in the software guide was
not very pleasent.  The minted latex package uses
the pygmentize python module to produce a much
more appealing code presentation.

REFERENCE=~/src/BT-build/ITKv4/Examples/Registration/ImageRegistration8.cxx
for i in  vim monokai manni perldoc borland colorful default murphy vs trac tango fruity autumn bw emacs pastie friendly native; do
    pygmentize -f html -l cpp -O full,style=${i} -o ${i}_pygment.html ${REFERENCE}
done

Using the emacs template for the momement, but that is not a long term solution.
ENH: Move XFig away, and replace with eps version of art.
ENH: Fixed typo in formula

https://issues.itk.org/jira/browse/ITK-3042
ENH: Converted all .fig to .eps files.
ENH: Update to next version of ITK.
ENH: Renamed SoftwareGuide.tex to remove ambiguitiy.

The name of the .tex file and the name of Directories
in the source an build tree were all the same, and this
made it difficult to use grep to find the desired items.

Additionally the LaTeX tools take the base name rather
than the full file name, and this caused more confusion while
debugging the programs builds.
BUG: Need to create directory before writing to it.
ENH: Fortify testing of using full paths.