[PTFM-9404] Clone system requirements from template job in dx run --clone
PTFM-9636: Add tests for dx run --clone with systemRequirements

Also cache and display cloned job's systemRequirements in the new
job's details.
Refine dx run input flag behavior

* Make --input-json/--input-json-file override a cloned job's input
* Document change in dx run --input-help
* Add tests
PTFM-9562: dxpy: add "fields" arg for describing jobs and apps
PTFM-9656 Improve hygiene of Python doc builds.

Some state is kept in _sources that would cause the "source" pages to
not be refreshed.
PTFM-9656 Add a docstring for DXFile.get_download_url.
PTFM-9656 More doc build hygiene.

(Nuke the build products from orbit... it's the only way to be sure.)
Trivial formatting cleanup (to be continued in a branch along with a potentially more substantive change).