order contigs by length for improve assembly
fix typo
Merge branch 'pipeline' into order_contigs
Merge pull request #239 from martinghunt/single_cell_assembly

added single cell assembly option
update memory limit for bsub options
Merge pull request #240 from CraigPorter/lsf_memory

update memory limit for bsub options
Merge pull request #238 from CraigPorter/order_contigs

Order contigs
filter out lanes which have already been mapped
speedup mapping by not generating coverage data thats not used
no need to check if mapping done twice
Merge pull request #241 from andrewjpage/speedup_mapping

Speedup mapping
Deal with single cell reads differently when getting kmer sizes