coding style
gth: increase MAXSUFFIXLEN
gth: give proper echo message for two-class model
Merge pull request #130 from gordon/gth

gth: small improvements
Merge pull request #131 from gordon/tre

import libtre and use it as a regex.h replacement
add reseting and accessing functions to kmeriterator

Conflicts:
	src/match/sfx-mappedstr.c
add help comments
change handling of edit operations

add documentation
add tools and classes for reference based genome compression
added compressed representation of edit script

needs cleanup
Merge pull request #129 from Garonenur/ole_final

Ole Eigenbrod tool
add '-seed' option to testsuite.rb
Merge pull request #132 from satta/seed

add '-seed' option to testsuite.rb
make tre compile on windows 64-bit