Add support for ScanSnap V3.2 and associated apps.
Included Sublime Text 2 Settings dir under APP_SUPPORT
Added ExpanDrive preferences
Added syncing of iWork templates
Added Skype
Added VelaClock
Added Transmit
Added TotalTerminal
Added TotalFinder
Added web preview preferences to TextMate
Added Terminal preferences.

Note that Terminal will replace the symlink with a copy of the linked file upon startup or shutdown.  So this allows you to backup it up / restore it on a new mac, but won't keep multiple macs in sync via Dropbox.
Added TextMate GetBundles preferences
Added TextWrangler
Added README entries for newly supported apps.
Add missed prefs file for VelaClock
Add support for VelaTerra
Add support for custom app definitions indirectly via .mackup.cfg
Forgot to declare a variable before using it...
A couple of missed config files.
Wasn't restoring the custom apps file correctly on fresh installs.  Should be fixed now.