Removed gh-pages from the travis testing.
added travis debugging output.
more debugging info.
Set the natural alignment based on the real data type, not the complex type.
reopening all the tests for a full travis run.
Reverted setup.py to do the run the full test suite.
Changed the test for alignment to use the real dtype equivalant. Also pushed some debug info for a travis raised DeprecationWarning.
Removed deprecation warning issue. The problem stemmed from scipy miscalling fftn - not our code.
Merge in fixes to solve test problems on Travis-CI.
Removed excessive double underscores.