added otulabels to heatmap.bin. made OTUlabels “smarter” so OTU01 and OTU001 are recognized as the same. fixed bug with chimera commands and count table with dereplicate=t. fixed compile issue with shhh.flows command in MPI version
added fastq to list.seqs, get.seqs and remove.seqs. fixed bug where venn command overwrote sharedotus files. fixed bug with sff.multiple setting processors=1 for future commands. Not using file redirects in commands it runs.
adding labels to list file.
Merge remote-tracking branch 'origin/master'
modifications to commands to add headers to list file.
added picrust and ref taxonomy parameters to make.biom
makefile
Merge remote-tracking branch 'upstream/master'