indicator file for successful fastq conversion
changed pipeline progress logs to use utc timestamp
add hooks for processing
refactored illumina_finished_msg.py
added option to write gzip output in qseq to fastq conversion
added processing of undetermined indices
method for calling extract_barcodes
added logging of casava output
parse --ignore-missing-... from config
more specific regexp for getting flowcell directories
test _get_directories() and bugfix
handle non-indexed runs
small fixes
Merge branch 'master' of github.com:b97pla/bcbb into develop
merge conflicts
Merge branch 'master' of github.com:SciLifeLab/bcbb into develop
Merge branch 'develop' of github.com:SciLifeLab/bcbb into develop
merge conflicts
modified casava call and output of undemultiplexed stats
removed verbose flag on rsync transfers