Merge pull request #1 from DylanLukes/master

Scripts for query coverage analysis.
fixed typo in Makefile
Merge branch 'dylan' into merge
annot
Merge branch 'master' of https://github.com/DylanLukes/eel-pond into merge
merged
Merge ../eel-pond.dylan
fixed to have prefix explicit
added blast parsing stuff
whoops, fixed blastparser
fixed with spaces
updated for non-ncbi
removed unnecessary space in annotate-seqs output
fixed annotate-seqs to complain more loudly about missing something in mouse_names
Merge branch 'master' of github.com:ctb/eel-pond
updated to allow both ncbi and not in annotate-seqs
fixed output file bug
added -z for no-ncbi in query; cleaned up, etc.
more output from make-reciprocal
extract isoform information from lamp3